色谱 ›› 2025, Vol. 43 ›› Issue (11): 1275-1283.DOI: 10.3724/SP.J.1123.2024.12026

• 教学研究 • 上一篇    

分析化学综合实验:电喷雾电离质谱分析双链脱氧核糖核酸和天然药物的非共价相互作用

马蕾*(), 王英辉, 袁云兰, 王珊珊   

  1. 长安大学理学院,陕西 西安 710064
  • 收稿日期:2024-12-23 出版日期:2025-11-08 发布日期:2025-11-07
  • 通讯作者: *Tel:(029)82334393,E-mail:malei1987@chd.edu.cn.
  • 基金资助:
    陕西省自然科学基金项目(2024JC-YBQN-0586);国家自然科学基金青年项目(22103007);国家自然科学基金青年项目(22404008);长安大学实验教学改革研究项目(20231828)

Comprehensive analytical chemistry experiment: analysis of non-covalent interactions between double-stranded deoxyribonucleic acid and a natural drug by electrospray ionization mass spectrometry

MA Lei*(), WANG Yinghui, YUAN Yunlan, WANG Shanshan   

  1. School of Sciences,Chang’an University,Xi’an 710064,China
  • Received:2024-12-23 Online:2025-11-08 Published:2025-11-07
  • Supported by:
    Natural Science Foundation of Shaanxi Province(2024JC-YBQN-0586);National Natural Science Foundation of China(22103007);National Natural Science Foundation of China(22404008);Research Project on Experimental Teaching Reform of Chang’an University(20231828)

摘要:

针对传统分析化学实验课程教学中仪器分析缺失等问题,本研究基于成果导向教育(OBE)理念,提出综合实验的育人目标、素养目标和课程目标。在此背景下,以软电离质谱技术为核心,结合非共价相互作用的教学内容,设计了电喷雾电离质谱(ESI-MS)测定双链脱氧核糖核酸(DNA)和天然药物柚皮苷非共价相互作用的综合实验。该实验面向本科三年级学生,以选修形式开放。实施过程践行线上、线下混合式教学模式,包含课前预习、课中实践和课后复盘环节,搭建了完备的教学平台。实验流程具体包括样品溶液配制、双链DNA的退火合成、药物与DNA反应以及质谱分析和数据处理,体现了多学科交叉知识的综合运用。学生运用ESI-MS负离子和正离子分析模式,结合一级和二级质谱(MS/MS)数据,深入探讨柚皮苷与目标DNA的结合计量比、相对结合强度和作用力类型等信息。实验考评从预习、操作到成果展示,全方位评估学生的综合能力,实行过程性评价,构建了完整的教学体系。本实验将基础知识与科研前沿相融合,操作安全、易行,具有很强的趣味性、拓展性和创新性。该实验的开展不仅丰富了分析化学课程的教学内容,激发学生的科研兴趣,锻炼学生全面的思辨能力,提高其安全意识,还为其未来的科研工作奠定了坚实基础,实现了全面育人的实验教学目标。

关键词: 分析化学, 实验教学, 质谱分析, 化学教育, 非共价相互作用

Abstract:

Analytical chemistry experiments are essential foundational courses for first- and second-year undergraduates in chemistry, chemical engineering, materials science, and pharmacy. These courses provide students with principles and operational skills of analytical instruments, alongside training in qualitative and quantitative analysis. However, current teaching practices face three main challenges: (1) insufficient focus on instrumental analysis; (2) outdated experimental content misaligned with modern scientific advancements; and (3) limited experimental hours due to curriculum constraints. To systematically address these issues, we proposed educational objectives, competency goals, and course objectives based on outcome-based education (OBE) philosophy. Building upon this backdrop, a comprehensive experiment utilizing electrospray ionization mass spectrometry (ESI-MS) was designed to investigate non-covalent interactions between double-stranded deoxyribonucleic acid (DNA) and naringin, a flavonoid natural drug. The experiment is offered to third-year undergraduate students as an elective. In the implementation process, a blended teaching model combining online and offline methods is adopted. The experimental teaching process is structured into three stages: pre-class preparation, in-class practice, and post-class review. Pre-class tasks include literature reviews, artificial intelligence (AI)-assisted summaries, pre-lab report writing and group discussions. This part is mainly conducted online without occupying class hours. During in-class practice, students synthesized double-stranded DNA by annealing single-stranded DNA (heated at 90 ℃ for 15 min, followed by slowly cooling to (25±1) ℃ overnight and stored at -20 ℃). The resulting DNA was incubated with naringin at a 1∶4 concentration ratio in ammonium acetate for 15 min. The mixture was then analyzed by ESI-MS on a linear ion trap mass spectrometer. Both negative and positive ion modes were employed with optimized parameters encompassing spray voltage, capillary voltage, tube lens offset, heated capillary temperature, nitrogen sheath and auxiliary gas flows. Data acquisition involved 150 averaged scans using Xcalibur software. ESI-MS under negative ion mode was used to detect the non-covalent complexes. Secondary mass spectrometry (MS/MS) of 5-charged complex ions showed guanine base loss and minimal drug dissociation, indicating strong non-covalent interactions. In positive ion mode, MS yielded lower complex abundance, likely due to charge redistribution during ionization. The results reveal that naringin binds DNA predominantly via π-π stacking and hydrogen bonding, with a 1∶1 stoichiometry (relative abundance 60.91%) and a relative binding affinity of 39.20%. Post-class, students were required to process data, write formal lab reports, create presentations for defense, and design a feasible extension experiment. At the same time, a grading system was established for these three phases. The evaluation system emphasizes formative assessment, focusing on aspects such as compliance with experimental procedures, workflow efficiency, safety measures, teamwork, problem-solving skills, and experimental data handling. This multidimensional approach ensures equitable grading and pedagogical validity. This curriculum bridges research and education by introducing MS-based non-covalent interaction analysis into undergraduate curricula. The extended experimental design permits curricular expansion of the course. Some students designed structure-activity relationship (SAR) investigations of flavonoids (e.g., naringenin vs. naringin), revealing the role of glycosylation in DNA binding affinity. In addition, students designed a fluorescence quenching spectroscopy experiment, demonstrating interdisciplinary problem-solving skills. It closely aligns with the OBE philosophy, a student-centered framework that fosters innovation. Feedback indicates that 96% of undergraduates perceived significant improvements in their research capabilities and interdisciplinary integration skills. However, some challenges were noted, including students’ initial hesitancy with advanced instrumentation and limited instruments and drugs. We plan to improve teaching in these areas in the future. In conclusion, this OBE-driven experiment successfully modernized analytical chemistry education in mass spectrometry applications by integrating theoretical knowledge with cutting-edge research skills. The project establishes a comprehensive teaching platform and constructs a holistic teaching system, featuring operational safety and accessibility while offering strong demonstrative value in fostering interest, extensibility and innovation. The experiment not only enriches the content of analytical chemistry courses, inspires students’ research interests, and hones their critical thinking abilities, but also enhances their safety awareness and lays a solid foundation for future research endeavors, thus achieving the comprehensive educational goals of experimental teaching.

Key words: analytical chemistry, experimental teaching, mass spectrometry analysis, chemistry education, non-covalent interaction

中图分类号: